scan2_snpasso_rng: Find region with LOD scores around the given genomic interval

In duytpm16/qtl2utils: Modification of QTL2 Plots

Description

This function finds the haplotype region with LOD scores around the given genomic interval.

Usage

scan2_snpasso_rng(markers, scan1_output, max_chr, start, end)

Arguments

markers	A dataframe of marker positions. Should contain a 'chr' and 'pos' column.
scan1_output	Output of scan1().
max_chr	Character value of the chromosome to be plotted.
start	Position defining the start of an interval to get scan1 LOD scores. Should be a single number, and if provided, chr should also have length 1.
end	Position defining the end of an interval to get scan1 LOD scores. Should be a single number, and if provided, chr should also have length 1.

duytpm16/qtl2utils documentation built on May 13, 2019, 6:08 p.m.