bedtoolsMerge
is a wrapper for bedtools merge
that merges overlapping intervals within individual bed files but NOT across bed files.
1 2 | bedtoolsMerge(bedFiles, flank = 0, scorecol = 5, operation = "none",
strand = FALSE, threads = getOption("threads", 1L))
|
bedFiles |
A character vector of paths to bed files. |
flank |
"Maximum distance between features allowed for features to be merged. Default is 0. That is, overlapping and/or book-ended features are merged." |
scorecol |
Positive integer specifying the column with values for performing the specified operation. |
operation |
to perform on overlapping bed intervals. Can be one of: none,sum,mean,collapse,distinct,count,count_distinct. Default is none, meaning no operation is performed. See bedtools docs for more info. |
threads |
A positive integer specifying how many samples to process simultaneously. |
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