bedtoolsSubtract: Remove regions from a bed file overlapping another bed file.

Description Usage Arguments

Description

bedtoolsSubtract is a wrapper for bedtools subtract.

Usage

1
2
bedtoolsSubtract(a, b, extraargs = "", header = TRUE, count = FALSE,
  threads = getOption("threads", 1L))

Arguments

a

A character vector of paths to bed files.

b

A path to the bed file used to remove intervals in a.

extraargs

A string passed as arguments to bedtools subtract

count

If TRUE, only returns the number of intervals from the operation.

threads

A positive integer specifying how many samples to process simultaneously.


dvera/gyro documentation built on May 15, 2019, 6:18 p.m.