samtoolsSort: Sort bams by position or name
In dvera/gyro: gyro: Genomic utility wrappers in R

samtools.sort sorts bam files either by position or read name using samtools sort.

1 2	samtoolsSort(bamFiles, outputFormat = "bam", sortThreads = 1, threads = getOption("threads", 1L), memory = "768M", sortByName = FALSE)

`bamFiles`	A character vector of paths to bam files.
`outputFormat`	String specifying output format: ('sam'/'bam'/'cram')
`sortThreads`	A positive integer specifying the number of sorting and compression threads
`threads`	A positive integer specifying how many bams to process simultaneously.
`memory`	String specifying maximum memory per thread; suffix K/M/G recognized.
`sortByName`	Boolean. If TRUE, reads are sorted by name. If FALSE, reads are sorted by chromosome/position