bamCount | Count reads in bam files |
bamParseLengths | Parse reads in bam files by insert size. |
bedHist | Plot a histogram of interval sizes in bed files |
bedParseLengths | Parse intervals in bed files by size. |
bedSizes | Retreive interval sizes in bed files |
bedSort | Sort beds by chromosome and position |
bgHist | Plot a histogram of scores sizes in bedGraph files |
bgScores | Retreive scores in bedGraph files |
sam.stats | Get summary statistics for bam files |
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