bamCount: Count reads in bam files

In dvera/travis: R Utilities for Bed and BEdgRaphs

Description

bamCount is a simple wrapper for samtools view -c for counting the number of reads in a bam file.

Usage

bamCount(bamfiles, q = 0, threads = getOption("threads", 1L))

Arguments

q	An integer >= 0 specifying the minimum quality of a read for it to be counted.
threads	A positive integer specifying how many bams to process simultaneously.
bamFiles	A character vector of paths to bam files.

dvera/travis documentation built on June 5, 2019, 5:12 a.m.