bedSort: Sort beds by chromosome and position

Description Usage Arguments

Description

bedSort sorts bed files chromosome then position using the system's sort.

Usage

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bedSort(bedFiles, threads = getOption("threads", 1L), sortBuffer = "1G",
  sortThreads = NULL)

Arguments

bedFiles

A character vector of paths to bed files.

threads

A positive integer specifying how many bams to process simultaneously.

sortThreads

A positive integer specifying the number of sorting and compression threads

memory

String specifying maximum memory per thread; suffix K/M/G recognized.

sortByName

Boolean. If TRUE, reads are sorted by name. If FALSE, reads are sorted by chromosome/position


dvera/travis documentation built on June 5, 2019, 5:12 a.m.