rawEnrichmentAnalysis: Calculated raw xCell enrichment scores

In dviraran/xCell: Cell type enrichment analysis

Calculated raw xCell enrichment scores

Description

rawEnrichmentAnalysis Returns the raw xCell cell types enrichment scores.

Usage

rawEnrichmentAnalysis(expr, signatures, genes, file.name = NULL,
  parallel.sz = 4, parallel.type = "SOCK")

Arguments

expr	the gene expression data set. A matrix with row names as symbols and columns as samples.
signatures	a GMT object of signatures.
genes	list of genes to use in the analysis.
file.name	string for the file name for saving the scores. Default is NULL.
parallel.sz	integer for the number of threads to use. Default is 4.
parallel.type	Type of cluster architecture when using snow. 'SOCK' or 'FORK'. Fork is faster, but is not supported in windows.

Value

the raw xCell scores

dviraran/xCell documentation built on May 3, 2024, 7:17 p.m.