transformScores: Transform scores from raw scores to fractions
In dviraran/xCell: Cell type enrichment analysis
transformScores R Documentation
Transform scores from raw scores to fractions
Description
transformScores Returns the trasnformed xCell scores (not adjusted).
Usage
transformScores(scores, fit.vals, scale = TRUE, fn = NULL)
Arguments
scores
raw scores of cell types calculated by rawEnrichmentAnalysis
fit.vals
the calibration values in the spill object (spill$fv).
scale
if TRUE, uses scaling to trnasform scores using fit.vals
fn
string for the file name for saving the scores. Default is NULL.
Value
the trasnformed xCell scores
dviraran/xCell documentation built on May 3, 2024, 7:17 p.m.
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| transformScores | R Documentation |
Transform scores from raw scores to fractions
Description
transformScores Returns the trasnformed xCell scores (not adjusted).
Usage
transformScores(scores, fit.vals, scale = TRUE, fn = NULL)
Arguments
scores |
raw scores of cell types calculated by rawEnrichmentAnalysis |
fit.vals |
the calibration values in the spill object (spill$fv). |
scale |
if TRUE, uses scaling to trnasform scores using fit.vals |
fn |
string for the file name for saving the scores. Default is NULL. |
Value
the trasnformed xCell scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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