spillOver: Adjust scores using the spillover compensation method
In dviraran/xCell: Cell type enrichment analysis
Description
Usage
Arguments
Value
Description
spillOver Returns the adjusted xCell scores.
Usage
1
Arguments
transformedScores
the trasnformed scores of cell types calculated by transformScores
K
the Spillover matrix (spill$K).
alpha
a value to override the spillover alpha parameter. Deafult = 0.5
file.name
string for the file name for saving the scores. Default is NULL.
Value
the adjusted xCell scores
dviraran/xCell documentation built on Nov. 22, 2020, 7:24 p.m.
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Description Usage Arguments Value
Description
spillOver Returns the adjusted xCell scores.
Usage
1 |
Arguments
transformedScores |
the trasnformed scores of cell types calculated by transformScores |
K |
the Spillover matrix (spill$K). |
alpha |
a value to override the spillover alpha parameter. Deafult = 0.5 |
file.name |
string for the file name for saving the scores. Default is NULL. |
Value
the adjusted xCell scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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