xCellSignifcanceBetaDist: Calculate significance p-values for the null hypothesis that...
In dviraran/xCell: Cell type enrichment analysis
Description
Usage
Arguments
Value
Description
xCellSignifcanceBetaDist Returns the FDR adjusted p-values of the chance that the cell is not present in the mixture.
Usage
1
2
xCellSignifcanceBetaDist(scores, beta_params = NULL, rnaseq = T,
file.name = NULL)
Arguments
scores
the xCell scores.
beta_params
the pre-calculated beta distribution parameters from random mixtures.
rnaseq
if beta_params is null, than uses xCell.data beta_params. If TRUE uses sequencing-based params, else array-based params.
file.name
file name to write the p-values table.
Value
a p-values matrix for each score.
dviraran/xCell documentation built on Nov. 22, 2020, 7:24 p.m.
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Description Usage Arguments Value
Description
xCellSignifcanceBetaDist Returns the FDR adjusted p-values of the chance that the cell is not present in the mixture.
Usage
1 2 | xCellSignifcanceBetaDist(scores, beta_params = NULL, rnaseq = T,
file.name = NULL)
|
Arguments
scores |
the xCell scores. |
beta_params |
the pre-calculated beta distribution parameters from random mixtures. |
rnaseq |
if beta_params is null, than uses xCell.data beta_params. If TRUE uses sequencing-based params, else array-based params. |
file.name |
file name to write the p-values table. |
Value
a p-values matrix for each score.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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