Hos: Estimate observed heterozygosity corrected for sample size...
In dyerlab/gstudio: Tools Related to the Spatial Analysis of Genetic Marker Data
Hos R Documentation
Estimate observed heterozygosity corrected for sample size after Nei
Returns the general observed heterozygosity parameter
from the frequencies
Description
Estimate observed heterozygosity corrected for sample size after Nei
Returns the general observed heterozygosity parameter
from the frequencies
Usage
Hos(x, stratum = "Population")
Arguments
x
An object of type locus
stratum
A flag indicating that you want to estimate Nei's unbiased Ho
across sampling locations.
Value
The expected heterozygosity
Note
This function can be called on a single vector of data, a data.frame of loci,
or a data.frame of locus objects across strata. If the estimating across
stratum, the unbiased estimator should be used to average across stratum and is performed
by passing the appropriate stratum= argument.
Author(s)
Rodney J. Dyer rjdyer@vcu.edu
Examples
data(arapat)
Hos(arapat)
loci <- c( locus( c("A","A") ), locus( c("A","A") ), locus( c("A","B") ) )
Hos( loci )
dyerlab/gstudio documentation built on Jan. 17, 2025, 11:17 a.m.
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| Hos | R Documentation |
Estimate observed heterozygosity corrected for sample size after Nei Returns the general observed heterozygosity parameter from the frequencies
Description
Estimate observed heterozygosity corrected for sample size after Nei
Returns the general observed heterozygosity parameter from the frequencies
Usage
Hos(x, stratum = "Population")
Arguments
x |
An object of type |
stratum |
A flag indicating that you want to estimate Nei's unbiased Ho across sampling locations. |
Value
The expected heterozygosity
Note
This function can be called on a single vector of data, a data.frame of loci,
or a data.frame of locus objects across strata. If the estimating across
stratum, the unbiased estimator should be used to average across stratum and is performed
by passing the appropriate stratum= argument.
Author(s)
Rodney J. Dyer rjdyer@vcu.edu
Examples
data(arapat)
Hos(arapat)
loci <- c( locus( c("A","A") ), locus( c("A","A") ), locus( c("A","B") ) )
Hos( loci )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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