Pe: Polymorphic index for loci
In dyerlab/gstudio: Tools Related to the Spatial Analysis of Genetic Marker Data
Pe R Documentation
Polymorphic index for loci
Description
This function returns the effective number of alleles in a sample.
Usage
Pe(x, ...)
Arguments
x
A set of locus objects either as a vector or within a
data.frame.
...
Ignored (for consistency)
Value
The polymorphic index for the locus, sum(pi(1-pi)) as a numeric value
or as a data.frame if multiple loci are passed.
Examples
locus <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
Pe(locus)
locus2 <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
df <- data.frame( locus, locus2 )
Pe(df)
dyerlab/gstudio documentation built on Jan. 17, 2025, 11:17 a.m.
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| Pe | R Documentation |
Polymorphic index for loci
Description
This function returns the effective number of alleles in a sample.
Usage
Pe(x, ...)
Arguments
x |
A set of |
... |
Ignored (for consistency) |
Value
The polymorphic index for the locus, sum(pi(1-pi)) as a numeric value
or as a data.frame if multiple loci are passed.
Examples
locus <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
Pe(locus)
locus2 <- c( locus(1:2), locus(c(1,1)), locus(c(2,2)), locus(2:3) )
df <- data.frame( locus, locus2 )
Pe(df)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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