hwe: Tests for Hardy-Weinberg Equilibrium
In dyerlab/gstudio: Tools Related to the Spatial Analysis of Genetic Marker Data
hwe R Documentation
Tests for Hardy-Weinberg Equilibrium
Description
This function tests for Hardy-Weinberg Equilibrium using the either
the chi-square approximation or a permutation approach.
Usage
hwe(x, mode = c("Chi")[1], supress_warnings = FALSE)
Arguments
x
A data.frame with one or more locus objects in it
mode
The way in which the probabilities are estimated. Possible values include
'Chi': Chi-square approximation & 'Permute': A permutation approach
supress_warnings
A flag that prevents sample size warnings from being displayed
(often helpful if you are simulating data sets for permutation)
Value
A data.frame with columns for Locus, Chi (the stat), df, and Prob.
Author(s)
Rodney J. Dyer rjdyer@vcu.edu
Examples
data(arapat)
sonora <- arapat[ arapat$Species=="Mainland",]
hwe( sonora )
dyerlab/gstudio documentation built on Feb. 2, 2024, 8:24 p.m.
R Package Documentation
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| hwe | R Documentation |
Tests for Hardy-Weinberg Equilibrium
Description
This function tests for Hardy-Weinberg Equilibrium using the either the chi-square approximation or a permutation approach.
Usage
hwe(x, mode = c("Chi")[1], supress_warnings = FALSE)
Arguments
x |
A |
mode |
The way in which the probabilities are estimated. Possible values include 'Chi': Chi-square approximation & 'Permute': A permutation approach |
supress_warnings |
A flag that prevents sample size warnings from being displayed (often helpful if you are simulating data sets for permutation) |
Value
A data.frame with columns for Locus, Chi (the stat), df, and Prob.
Author(s)
Rodney J. Dyer rjdyer@vcu.edu
Examples
data(arapat)
sonora <- arapat[ arapat$Species=="Mainland",]
hwe( sonora )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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