Add the future dimensionality reduction based on RNA velocity information, using the existing dimensionality reduction
1 2 3 4 5 6 7 8 9 10 11 12 13 | add_dimred_future(
dataset,
dimred = dynwrap::get_dimred(dataset),
expression = dataset$expression,
expression_future = dataset$expression_future
)
embed_velocity(
dataset,
dimred = dynwrap::get_dimred(dataset),
expression = dataset$expression,
expression_future = dataset$expression_future
)
|
dataset |
A dataset created by |
dimred |
Can be
|
expression |
The normalised expression values of genes (columns) within cells (rows). This can be both a dense and sparse matrix. |
expression_future |
Projected expression using RNA velocity of genes (columns) within cells (rows). This can be both a dense and sparse matrix. |
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