add_velocity: Add velocity to a dynwrap dataset

In dynverse/scvelo: An R wrapper around the great "scvelo" python package

Description

Add velocity to a dynwrap dataset

Usage

add_velocity(
  dataset,
  spliced = dataset$expression,
  unspliced = dataset$expression_unspliced,
  mode = c("stochastic", "deterministic", "dynamical"),
  n_neighbors = 20L,
  velocity = get_velocity(spliced = spliced, unspliced = unspliced, mode = mode,
    n_neighbors = n_neighbors)
)

Arguments

dataset	A dataset created by wrap_data() or wrap_expression()
spliced	Spliced expression matrix
unspliced	Unspliced expression matrix
mode	Whether to run the estimation using the deterministic or stochastic model of transcriptional dynamics.
n_neighbors	Number of neighbors to use.
velocity	The velocity object as generated by [get_velocity()].

dynverse/scvelo documentation built on April 9, 2020, 3:42 a.m.