get_velocity: Calculate velocity
In dynverse/scvelo: An R wrapper around the great "scvelo" python package

Description Usage Arguments

View source: R/velocity.R

Calculate velocity

get_velocity(
  spliced,
  unspliced,
  mode = c("stochastic", "deterministic", "dynamical"),
  n_neighbors = 20L,
  var_names = "velocity_genes",
  layer = "spliced"
)

`spliced`	Spliced expression matrix
`unspliced`	Unspliced expression matrix
`mode`	Whether to run the estimation using the deterministic or stochastic model of transcriptional dynamics.
`n_neighbors`	Number of neighbors to use.
`var_names`	Names of variables/genes to use for the fitting. Can be '"velocity_genes"', '"all"', or a set of gene names.