Man pages for dzhang32/RNAdiagnosR
What the Package Does (One Line, Title Case)
| annotate_junc_ref | Annotate junctions with respect to existing annotation |
| dot-convert_hits_to_annot_ref | Converts overlapping hits into annotation |
| dot-get_exons_juncs_to_plot | Obtain the details of the exons/junctions to plot |
| dot-get_gr_for_start_end | Seperates gr by start and end |
| dot-merge_lists | Merges two Characterlists into 1 with elementwise... |
| filter_junc | Filter junctions using count and acceptor/donor annotation |
| get_coverage | Get coverage from bigwig file(s) across a region of interest |
| get_junc_count_filter | Obtain the junctions to filter based on count |
| merge_junc | Merge juncs from multiple samples |
| normalise_junc | Normalise junction counts for RNA-seq samples |
| plot_coverage | Plots the coverage over a region of interest |
| plot_sashimi | Visualise RNA-seq data in a the form of a sashimi plot |
| test_annotate_junc_ref | Tests annotate_junc_ref for whether N juncs are matching the... |
| test_normalise_junc | Tests whether the normalise_junc function has worked as... |
