merge_junc: Merge juncs from multiple samples
In dzhang32/RNAdiagnosR: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Description
merge_junc merges the STAR SJ.out outputs from several samples into a
count df. Uses a full join, so keeps all unique junctions from every sample.
Usage
1
merge_junc(junc_paths, sample_ids, chr_to_filter = NULL)
Arguments
junc_paths
chr. Paths to the SJ.out files.
sample_ids
chr. Sample ids in the same length and order and the
junc_paths
chr_to_filter
chr. Chromosomes you would like to keep.
Value
df. Junction co-ordinates and columns with the raw counts from each
sample
dzhang32/RNAdiagnosR documentation built on Dec. 5, 2019, 2 a.m.
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Description Usage Arguments Value
Description
merge_junc merges the STAR SJ.out outputs from several samples into a
count df. Uses a full join, so keeps all unique junctions from every sample.
Usage
1 | merge_junc(junc_paths, sample_ids, chr_to_filter = NULL)
|
Arguments
junc_paths |
chr. Paths to the SJ.out files. |
sample_ids |
chr. Sample ids in the same length and order and the junc_paths |
chr_to_filter |
chr. Chromosomes you would like to keep. |
Value
df. Junction co-ordinates and columns with the raw counts from each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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