annotate_junc_ref: Annotate junctions with respect to existing annotation

In dzhang32/RNAdiagnosR: What the Package Does (One Line, Title Case)

Description

annotate_junc_ref takes as input the junction co-ordinates and annotates the start and end position based on precise overlap with a known exon boundary.

Usage

annotate_junc_ref(junc_metadata, ref)

Arguments

junc_metadata	junction metadata output from normalise_junc. The essential component is the junction co-ordinates in a GRanges format.
ref	gr. Gtf as a GRanges object (e.g. imported through rtracklayer).

Value

list. Raw and normalised counts including metdata detailing junction annotation.

dzhang32/RNAdiagnosR documentation built on Dec. 5, 2019, 2 a.m.