plot_coverage: Plots the coverage over a region of interest

In dzhang32/RNAdiagnosR: What the Package Does (One Line, Title Case)

Description

plot_coverage

Usage

plot_coverage(coverage_case, coverage_ctrl = NULL,
  region_to_plot = NULL, binwidth = 50)

Arguments

coverage_case	Either bw path(s) or dataframe containing coverage returned from get_coverage
coverage_ctrl	Either bw path(s) or dataframe containing coverage returned from get_coverage
region_to_plot	gr. A genomic range of length 1 used to grab coverage (required if coverage is a bw_path) and to determine the xlimits to plot. If NULL, will use take the min and the max position from the coverage from case (and ctrls).
binwidth	int.

Value

tibble with the columns detailing chromosome, position 1 for every base in region_of_interest and normalised coverage

dzhang32/RNAdiagnosR documentation built on Dec. 5, 2019, 2 a.m.