In eahrne/SafeQuant: A Toolbox for the Analysis of Proteomics Data
knitr::opts_chunk$set(echo = TRUE)
library(plotly)
library(magrittr)
library(SafeQuant)
library(affy)
library(motifStack)
library(dplyr)
library(DiffLogo)
library(ggplot2)
library(ggrepel)
library(knitr)
Volcanoes
plotlyWidgets <- htmltools::tagList()
p = ggVolcanoPlot(data=ggDf,pValueThrs=pValueThrs,log2RatioThrs=log2RatioThrs,thrsLineCol = "lightgrey",thrsLineLty = 2, title="test title")
plot(p)
# plotlyWidgets[[paste0(cond,"kinaseDown")]] = suppressWarnings(as.widget( ggplotly(q3)))
plotlyWidgets[["1"]] = suppressWarnings(as.widget(ggplotly(p)))
plotlyWidgets[["2"]] = suppressWarnings(as.widget(ggplotly(p)))
plotlyWidgets
ggplotly( plotAllGGVolcanoes(sqa) )
eahrne/SafeQuant documentation built on April 8, 2021, 10:10 a.m.
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knitr::opts_chunk$set(echo = TRUE) library(plotly) library(magrittr) library(SafeQuant) library(affy) library(motifStack) library(dplyr) library(DiffLogo) library(ggplot2) library(ggrepel) library(knitr)
Volcanoes
plotlyWidgets <- htmltools::tagList() p = ggVolcanoPlot(data=ggDf,pValueThrs=pValueThrs,log2RatioThrs=log2RatioThrs,thrsLineCol = "lightgrey",thrsLineLty = 2, title="test title") plot(p) # plotlyWidgets[[paste0(cond,"kinaseDown")]] = suppressWarnings(as.widget( ggplotly(q3))) plotlyWidgets[["1"]] = suppressWarnings(as.widget(ggplotly(p))) plotlyWidgets[["2"]] = suppressWarnings(as.widget(ggplotly(p))) plotlyWidgets ggplotly( plotAllGGVolcanoes(sqa) )
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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