README.md

In econtijoch/FEAT: FMT Efficacy Analysis Toolkit

FMT Efficacy Analysis Toolkit

A distributable package that includes a Shiny app and command-line functions to analyze the efficacy of FMT experiments.

The app will perform most all useful analysis downstream of generating an OTU table (for which you can use QIIME or any other method)

This app requires two packages that are not available on CRAN, but must be downloaded from bioconductor. To do this, simply type the following into the R command line:

source("https://bioconductor.org/biocLite.R")
biocLite("rhdf5")
biocLite("phyloseq")

To launch the Shiny app, simply load the package and run the launchFEAT() command.

Alternatively, you can run it directly from GitHub:

require(shiny)
runGitHub('econtijoch/FEAT/', subdir = 'inst/shiny-FEAT/')

econtijoch/FEAT documentation built on May 15, 2019, 8 p.m.