normalize_and_filter_batch: Nnormalize OTU counts for your OTU table, and impose a...

Description Usage Arguments Value

Description

Nnormalize OTU counts for your OTU table, and impose a minimum filter

Usage

1
normalize_and_filter_batch(biom_table, min_fraction)

Arguments

biom_table

otu table

min_fraction

minimum fraction of otus to filter on (e.g. 0.001)

Value

output OTU table with relative abundances above the provided minimum, and a pair of QC tables, too


econtijoch/FEAT documentation built on May 15, 2019, 8 p.m.