Man pages for econtijoch/FEAT
FMT Efficacy Analysis Toolkit
| batchFEAT | Command-line FEAT function to perform analysis in batch for a... |
| collapse_taxonomy | Define a function that will collapse a table by shared... |
| filter_by_metric | Define a function that filters tables by a minimum difference... |
| filter_function | Define a function to produce tables populated only by OTUs... |
| launchFEAT | Launch shiny app to analyze FMT efficacy |
| metric_function | Define a function that returns the mean or median OTU... |
| nonzero_fraction_getter | function that returns a table of OTUs and the fraction of... |
| normalize_and_filter | Within Shiny environment, normalize OTU counts for your OTU... |
| normalize_and_filter_batch | Nnormalize OTU counts for your OTU table, and impose a... |
| percent | Make a percentage |
| split_into_experiment | Within Shiny environment, split a data table into an... |
| split_into_experiment_batch | Split a data table into an experiment-specific table given... |
| sums_of_numbers_only | Define a function that will take a vector and return the mean... |
| table_reorder_first | function to reorder tables with a given value first |
| visualize_metrics | Function to produce FMT metric visualizations |
| visualize_metrics_batch | Function to produce FMT metric visualizations and save the... |
