plot_activities: Plot the activities of signature(s)

In edawson/tidysig: Plot mutational signatures using ggplot objects

Description

Plot the activities of signature(s)

Usage

plot_activities(
  x,
  title = NULL,
  xlabel = "Samples",
  ylabel = "Mutation Counts",
  ylimits = NULL,
  usePercent = FALSE,
  countsAsProportions = FALSE,
  showSampleNames = FALSE,
  orderByMutationCount = TRUE,
  facetGroupVariable = NULL
)

Arguments

x	A TidySig dataframe/tibble
title	A title for the plot
xlabel	An x-axis label
ylabel	A y-axis label
ylimits	Use custom ylimits (useful for normalizing the views of multiple signatures)
usePercent	Use percent scales (rather than counts)
countsAsProportions	Convert the input data (in counts) to per-signature proportions
showSampleNames	display sample names underneath the plot
orderByMutationCount	sort the data by descending number of mutations
facetGroupVariable	a variable to facet the data on (e.g., an exposure condition).

Value

a ggplot2 object

edawson/tidysig documentation built on May 2, 2020, 5:33 a.m.