plot_context: A helper function to plot mutational contexts, which are...

In edawson/tidysig: Plot mutational signatures using ggplot objects

Description

A helper function to plot mutational contexts, which are generally counts (in contrast to signatures, which are generally proportions).

Usage

plot_context(
  x,
  label = "Signature",
  title = "",
  xlabel = "Motif Length or Count",
  ylabel = "Count",
  usePercent = FALSE,
  ylimits = NULL,
  countsAsProportions = FALSE,
  separatePlots = FALSE,
  contextType = contextType
)

Arguments

x	A TidySig dataframe/tibble
label	The right-side (i.e., facet) label. Usually "Signature" or "Sample" or a sample ID.
title	A title for the plot
xlabel	An x-axis label
ylabel	A y-axis label
usePercent	Use percent scales (rather than counts)
ylimits	Use custom ylimits (useful for normalizing the views of multiple signatures). Takes a numeric vector length-two.
countsAsProportions	Use proportions, rather than raw counts.
separatePlots	Produce separate plots, one per Signature
contextType	An argument for determining the context, either ID83 or SBS96

edawson/tidysig documentation built on May 2, 2020, 5:33 a.m.