plot_signature: Plot an ID83 signature ro series of signatures

In edawson/tidysig: Plot mutational signatures using ggplot objects

Description

Plot an ID83 signature ro series of signatures

Usage

plot_signature(
  x,
  label = "Signature",
  title = "",
  xlabel = NULL,
  ylabel = "Count",
  usePercent = TRUE,
  ylimits = NULL,
  countsAsProportions = FALSE,
  separatePlots = FALSE,
  contextType = "auto"
)

Arguments

x	A TidySig dataframe/tibble
label	The right-side (i.e., facet) label. Usually "Signature" or "Sample" or a sample ID.
title	A title for the plot
xlabel	An x-axis label
ylabel	A y-axis label
usePercent	Use percent scales (rather than counts)
ylimits	Use custom ylimits (useful for normalizing the views of multiple signatures). Takes a numeric vector length-two OR a string "smart" to indicate that consistent y-limits should be automatically fit from the values in x.
countsAsProportions	Convert the input data (in counts) to per-signature proportions
separatePlots	If true, return a vector of plots, one for each signature, rather than one plot with a facet for each signature.
contextType	An argument for determining the context, generally "SBS96" or "ID83". The default, "auto", will attempt to determine the context automatically based on the columns of the x.

Value

a ggplot2 object, unless separatePlot = True, in which case a list of ggplot objects is returned.

edawson/tidysig documentation built on May 2, 2020, 5:33 a.m.