Description Usage Arguments Value Slots Author(s) References Examples
SpNaBaModel is used to store information about the naive Bayes model.
1 | SpNaBaModel(ModMatrix, Counts, Probs, Epsilon, Score, ...)
|
ModMatrix |
a SpNaBaMatrix. See |
Counts |
a SpNaBaCounts. See |
Probs |
a SpNaBaProbs. See |
Epsilon |
a SpNaBaEps. See |
Score |
a SpNaBaScore. See |
... |
argument pass to other methods |
An object of class SpNaBaModel
. See slot section for more details.
ModMatrix
a SpNaBaMatrix. See SpNaBaMatrix
.
Counts
a SpNaBaCounts. See SpNaBaCounts
.
Probs
a SpNaBaProbs. See SpNaBaProbs
.
Epsilon
a SpNaBaEps. See SpNaBaEps
.
Score
a SpNaBaScore. See SpNaBaScore
.
Enrique Del Callejo Canal (edelcallejoc@gmail.com), based on implemented algortihms in web platform SPECIES (see References).
http://species.conabio.gob.mx/
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | # Using SpNaBaMatrix constructor ----------------------
a <- matrix(rbinom(100, 100, runif(100, 0, 0.1)), nrow = 10, ncol = 10,
dimnames = list(paste0("id:", 1:10), letters[1:10]))
x.mat <- SpNaBaMatrix(freqmatrix = a)
# Counts calculation ----------------------------------
x.counts <- counts(x.mat)
# Probability calculation -----------------------------
x.probs <- probs(x.counts)
# Estimating epsilon ----------------------------------
x.eps <- epsilon(x.counts, x.probs)
# Estimating Score
x.score <- score(x.probs)
x.model <- SpNaBaModel(x.mat, x.counts, x.probs,
x.eps, x.score)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.