Files in edpratt1/KINATESTID
A Pipeline for Kinase-Specific Artificial Peptide Design
DESCRIPTION
NAMESPACE
NEWS.md
R/data_import.R
R/file_checks.R
R/flank_seq.R
R/generate_pssm.R
R/peptide_signature.R
R/screener.R
R/shiny_gui.R
R/substrate_scoring.R
R/sysdata.rda
R/uniprot_tryptic_digest.R
R/visualization.R
README.md
build/vignette.rds
data/aa_classification.rda
data/aa_cols.rda
data/blosum62.rda
data/core_aa_cols.rda
data/datalist
data/kinase_anno.rda
data/kinase_sets.rda
data/parker_substrates.rda
data/ptm_key.rda
data/screener_pY.rda
data/screener_raw.rda
data/screener_uniprot.rda
data/uniprot_tryptic.rda
heatmap.jpeg
inst/doc/KINATESTID.R
inst/doc/KINATESTID.Rmd
inst/doc/KINATESTID.html
inst/extdata/btk_kalip.csv
man/bkgrnd_corr.Rd
man/generate_substrates.Rd
man/get_candidateaa.Rd
man/get_normscores.Rd
man/import_substrates.Rd
man/import_uniprot.Rd
man/make_screener.Rd
man/multi_candidate_screener.Rd
man/multi_sample.Rd
man/multi_screener.Rd
man/norm_scores.Rd
man/peptide_intersect.Rd
man/peptide_screener.Rd
man/pssm_volcano.Rd
man/score_candidates.Rd
man/substrate_fisher_test.Rd
man/substrates_heatmap.Rd
man/substrates_property.Rd
man/substrates_qc.Rd
motifStack_plot.jpeg
screener_cutpoints.jpg
venn_plot.jpeg
vignettes/KINATESTID.Rmd
vignettes/heatmap.jpeg
vignettes/motifStack_plot.jpeg
vignettes/output/roc.jpg
vignettes/output/screener_cutpoints.jpg
vignettes/screener_cutpoints.jpg
vignettes/venn_plot.jpeg
vignettes/volcano_plot.jpeg
volcano_plot.jpeg
