peptide_screener: Score an individual existing peptide sequence

In edpratt1/KINATESTID: A Pipeline for Kinase-Specific Artificial Peptide Design

Description

Score an individual existing peptide sequence

Usage

peptide_screener(screener_dt, candidates_dt, target_kinase, family = FALSE)

Arguments

screener_dt	A four-element list generated using the 'multi_screener()' function.
candidates_dt	A data.table of candidate substrate sequences
target_kinase	Abbreviation (typically 3 letter) for the enzyme the substrate is to be optimized for.
family	A logical indicating whether to screen specifically against a kinase family (TRUE) or not (FALSE). The default value is FALSE.
kinase	Abbreviation (typically 3 letter) for the enzyme the substrate is to be optimized for.

Value

A data.table containing substrate scoring information for each enzyme in the provided 'screener_dt' file.

edpratt1/KINATESTID documentation built on Feb. 5, 2022, 1:21 p.m.