pssm_volcano: Create a PSSM volcano plot
In edpratt1/KINATESTID: A Pipeline for Kinase-Specific Artificial Peptide Design
Description
Usage
Arguments
Value
Description
Create a PSSM volcano plot
Usage
1
pssm_volcano(pssm, odds_cutoff = NULL, pval_cutoff = NULL)
Arguments
pssm
A list containing two data tables: 1) Exact Test P-values
and 2) Fisher Exact Odds.
odds_cutoff
The log 2 odds ratio threshold for being considered
significant. If not specified it is set to 0.5 automatically.
pval_cutoff
The threshold p-value to be considered significant.
If not specified it is set to 0.05 automatically.
Value
A ggplot2 object
edpratt1/KINATESTID documentation built on Feb. 5, 2022, 1:21 p.m.
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Description Usage Arguments Value
Description
Create a PSSM volcano plot
Usage
1 | pssm_volcano(pssm, odds_cutoff = NULL, pval_cutoff = NULL)
|
Arguments
pssm |
A list containing two data tables: 1) Exact Test P-values and 2) Fisher Exact Odds. |
odds_cutoff |
The log 2 odds ratio threshold for being considered significant. If not specified it is set to 0.5 automatically. |
pval_cutoff |
The threshold p-value to be considered significant. If not specified it is set to 0.05 automatically. |
Value
A ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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