Man pages for edpratt1/KINATESTID
A Pipeline for Kinase-Specific Artificial Peptide Design
| bkgrnd_corr | Subset common peptide sequences |
| generate_substrates | Generate and score candidate artificial peptide substrate... |
| get_candidateaa | Generate candidate position-specific amino acid residues |
| get_normscores | Scaling raw peptide scores from candidate list |
| import_substrates | Import and annotate enzyme substrate preference files |
| import_uniprot | Generate an in silico control peptide library |
| make_screener | Create new input screener file |
| multi_candidate_screener | Score multiple existing peptide sequences |
| multi_sample | Import enzyme substrate preference files and parse sample... |
| multi_screener | Generate enzyme screener file |
| norm_scores | Scaling raw peptide scores from a table |
| peptide_intersect | Find peptide commonality across replicates |
| peptide_screener | Score an individual existing peptide sequence |
| pssm_volcano | Create a PSSM volcano plot |
| score_candidates | Score candidate artificial peptide substrate sequences |
| substrate_fisher_test | Construct PSSM and perform Fisher Exact Test |
| substrates_heatmap | Create heatmap of PSSM data |
| substrates_property | Plot amino acid properties across the flank sequence |
| substrates_qc | Generate QC report |
