Files in egenn/rtemis

Machine Learning and Visualization

R/00_S7_init.R R/01_S7_Hyperparameters.R R/02_S7_Metrics.R R/03_S7_Preprocessor.R R/04_S7_Resampler.R R/05_S7_Tuner.R R/07_S7_Supervised.R R/08_S7_ClusteringParameters.R R/09_S7_Clustering.R R/10_S7_DecompositionParameters.R R/11_S7_Decomposition.R R/12_S7_Themes.R R/13_S7_SuperConfig.R R/14_S7_utils.R R/algorithmDB.R R/calibrate.R R/check_data.R R/check_input_data.R R/cluster.R R/cluster_CMeans.R R/cluster_flexclust.R R/data.R R/ddSci.R R/decom_ICA.R R/decom_NMF.R R/decom_PCA.R R/decom_UMAP.R R/decom_tSNE.R R/decompose.R R/draw_3Dscatter.R R/draw_bar.R R/draw_box.R R/draw_calibration.R R/draw_conf.R R/draw_dist.R R/draw_graphd3.R R/draw_graphjs.R R/draw_heat.R R/draw_heatmap.R R/draw_leaflet.R R/draw_pie.R R/draw_protein.R R/draw_pvals.R R/draw_roc.R R/draw_scatter.R R/draw_spectrogram.R R/draw_table.R R/draw_ts.R R/draw_varimp.R R/draw_volcano.R R/draw_xt.R R/factorize.R R/ifw.R R/metrics.R R/msg.R R/preprocess.R R/present.R R/read.R R/resample.R R/rule_dist.R R/summarize.R R/synth_data.R R/theme.R R/train.R R/train_CART.R R/train_GAM.R R/train_GLM.R R/train_GLMNET.R R/train_Isotonic.R R/train_LightCART.R R/train_LightGBM.R R/train_LightRF.R R/train_LightRuleFit.R R/train_SVM.R R/train_TabNet.R R/tune.R R/tune_GridSearch.R R/utils.R R/utils_checks.R R/utils_color.R R/utils_data.R R/utils_data.table.R R/utils_date.R R/utils_df.R R/utils_duckdb.R R/utils_exec.R R/utils_files.R R/utils_ggplot2.R R/utils_graph.R R/utils_html.R R/utils_io.R R/utils_lightgbm.R R/utils_logical.R R/utils_os.R R/utils_palettes.R R/utils_plot.R R/utils_plotly.R R/utils_print.R R/utils_reactable.R R/utils_rt.R R/utils_rules.R R/utils_sge.R R/utils_strings.R R/utils_supervised.R R/utils_uniprot.R R/utils_xt.R R/utils_zip.R R/zzz.R README.md man/any_constant.Rd man/available_algorithms.Rd man/available_draw.Rd man/available_themes.Rd man/binmat2vec.Rd man/calibrate.Classification.Rd man/calibrate.ClassificationRes.Rd man/catrange.Rd man/catsize.Rd man/check_data.Rd man/choose_theme.Rd man/class_imbalance.Rd man/classification_metrics.Rd man/clean_colnames.Rd man/clean_names.Rd man/cluster.Rd man/col2grayscale.Rd man/col2hex.Rd man/color_adjust.Rd man/color_fade.Rd man/color_invertRGB.Rd man/color_mix.Rd man/color_op.Rd man/colorgrad.Rd man/crules.Rd man/ddSci.Rd man/ddb_collect.Rd man/ddb_data.Rd man/decomp.Rd man/desaturate.Rd man/describe.Rd man/df_movecolumn.Rd man/drange.Rd man/draw_3Dscatter.Rd man/draw_bar.Rd man/draw_box.Rd man/draw_calibration.Rd man/draw_confusion.Rd man/draw_dist.Rd man/draw_fit.Rd man/draw_graphD3.Rd man/draw_graphjs.Rd man/draw_heat.Rd man/draw_heatmap.Rd man/draw_leaflet.Rd man/draw_pie.Rd man/draw_protein.Rd man/draw_pvals.Rd man/draw_roc.Rd man/draw_scatter.Rd man/draw_spectrogram.Rd man/draw_table.Rd man/draw_ts.Rd man/draw_varimp.Rd man/draw_volcano.Rd man/draw_xt.Rd man/dt_describe.Rd man/dt_get_column_attr.Rd man/dt_index_attr.Rd man/dt_inspect_type.Rd man/dt_keybin_reshape.Rd man/dt_merge.Rd man/dt_names_by_attr.Rd man/dt_names_by_class.Rd man/dt_nunique_perfeat.Rd man/dt_pctmatch.Rd man/dt_pctmissing.Rd man/dt_set_autotypes.Rd man/dt_set_clean_all.Rd man/dt_set_cleanfactorlevels.Rd man/dt_set_logical2factor.Rd man/dt_set_one_hot.Rd man/explain.Rd man/factor_NA2missing.Rd man/factorize.Rd man/fct_describe.Rd man/features.Rd man/fwhm2sigma.Rd man/get-names.Rd man/get_factor_levels.Rd man/get_loaded_pkg_version.Rd man/get_mode.Rd man/get_vars_from_rules.Rd man/getnames.Rd man/getnamesandtypes.Rd man/ggtheme_dark.Rd man/ggtheme_light.Rd man/gmean.Rd man/grapes-BC-grapes.Rd man/graph_node_metrics.Rd man/gt_table.Rd man/init_project_dir.Rd man/inspect_type.Rd man/is_constant.Rd man/is_discrete.Rd man/labelify.Rd man/list2csv.Rd man/lotri2edgeList.Rd man/make_path.Rd man/matchcases.Rd man/mgetnames.Rd man/multigplot.Rd man/nCr.Rd man/one_hot2factor.Rd man/outcome.Rd man/permute.Rd man/pfread.Rd man/plot.Classification.Rd man/plot.Regression.Rd man/plot.SupervisedRes.Rd man/plot_roc.Rd man/plot_varimp.Rd man/predict.nullmod.Rd man/preprocess.Rd man/present.Rd man/present.list.Rd man/previewcolor.Rd man/psd.Rd man/qstat.Rd man/read.Rd man/recycle.Rd man/regression_metrics.Rd man/resample.Rd man/rnormmat.Rd man/rt_reactable.Rd man/rtemis-package.Rd man/rtpalette.Rd man/rule_dist.Rd man/rules2medmod.Rd man/runifmat.Rd man/set_outcome.Rd man/setdiffsym.Rd man/setup_CART.Rd man/setup_CMeans.Rd man/setup_GAM.Rd man/setup_GLM.Rd man/setup_GLMNET.Rd man/setup_GridSearch.Rd man/setup_HardCL.Rd man/setup_ICA.Rd man/setup_Isotonic.Rd man/setup_KMeans.Rd man/setup_LightCART.Rd man/setup_LightGBM.Rd man/setup_LightRF.Rd man/setup_LightRuleFit.Rd man/setup_NMF.Rd man/setup_NeuralGas.Rd man/setup_PCA.Rd man/setup_Preprocessor.Rd man/setup_RadialSVM.Rd man/setup_Resampler.Rd man/setup_TabNet.Rd man/setup_UMAP.Rd man/setup_tSNE.Rd man/sge_submit.Rd man/size.Rd man/sparsernorm.Rd man/summarize.Rd man/synth_multimodal.Rd man/synth_reg_data.Rd man/table1.Rd man/theme.Rd man/train.Rd man/uci_heart_failure.Rd man/uniprot_get.Rd man/uniquevalsperfeat.Rd man/vec2df.Rd man/winsorize.Rd man/xlsx2list.Rd man/xtdescribe.Rd man/zip2longlat.Rd man/zipdist.Rd tests/testthat.R tests/testthat/test_CheckData.R tests/testthat/test_Clustering.R tests/testthat/test_Decomposition.R tests/testthat/test_Hyperparameters.R tests/testthat/test_Metrics.R tests/testthat/test_Preprocessor.R tests/testthat/test_Resampler.R tests/testthat/test_Supervised.R tests/testthat/test_Theme.R tests/testthat/test_Tuner.R tests/testthat/test_checks.R tests/testthat/test_draw.R tests/testthat/test_explain.R tests/testthat/test_idx.R