Files in egenn/rtemis
Machine Learning and Visualization

.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/JL_splitlin.R R/addtree.R R/as.data.tree.rpart.R R/as.rules.rpart.R R/auc.R R/auc_pairs.R R/bias_variance.R R/boost.R R/boxcat.R R/c_CMeans.R R/c_DBSCAN.R R/c_EMC.R R/c_H2OKMeans.R R/c_HARDCL.R R/c_HOPACH.R R/c_KMeans.R R/c_MeanShift.R R/c_NGAS.R R/c_PAM.R R/c_PAMK.R R/c_SPEC.R R/calibrate.R R/calibrate_cv.R R/cartLinBoostTV.R R/cartLite.R R/cartLiteBoostTV.R R/check_data.R R/checkpoint_earlystop.R R/class_error.R R/class_imbalance.R R/clust.R R/col2hex.R R/colorAdjust.R R/colorGrad.R R/colorGrad.x.R R/colorMix.R R/colorOps.R R/colorgradient.x.R R/cols2list.R R/config.R R/d_H2OAE.R R/d_H2OGLRM.R R/d_ICA.R R/d_Isomap.R R/d_KPCA.R R/d_LLE.R R/d_MDS.R R/d_NMF.R R/d_PCA.R R/d_SPCA.R R/d_SVD.R R/d_TSNE.R R/d_UMAP.R R/dat2bsplinemat.R R/dat2poly.R R/data.R R/date2factor.R R/date_ops.R R/ddSci.R R/ddb_ops.R R/decom.R R/dependency_check.R R/desaturate.R R/df_ops.R R/distillTreeRules.R R/dplot3_addtree.R R/dplot3_bar.R R/dplot3_box.R R/dplot3_calibration.R R/dplot3_cart.R R/dplot3_conf.R R/dplot3_graphd3.R R/dplot3_graphjs.R R/dplot3_heatmap.R R/dplot3_leaflet.R R/dplot3_linad.R R/dplot3_pie.R R/dplot3_protein.R R/dplot3_pvals.R R/dplot3_spectrogram.R R/dplot3_table.R R/dplot3_ts.R R/dplot3_varimp.R R/dplot3_volcano.R R/dplot3_x.R R/dplot3_xt.R R/dplot3_xy.R R/dplot3_xyz.R R/drange.R R/dt_describe.R R/dt_ops.R R/earlystop.R R/explain.R R/factor_NA2missing.R R/factoryze.R R/format.call.R R/formatRules.R R/fwhm2sigma.R R/get_loaded_pkg_version.R R/get_rules.R R/ggtheme_dark.R R/ggtheme_light.R R/glm2table.R R/glmLite.R R/glmLiteBoostTV.R R/gmean.R R/gp.R R/graph_node_metrics.R R/gridSearchLearn.R R/gtTable.R R/htest.R R/html_ops.R R/hytboost.R R/hytboostnow.R R/hytreenow.R R/hytreew.R R/igraph_layout.R R/lightgbm_ops.R R/linadleaves.R R/lincoef.R R/list2csv.R R/logical_ops.R R/lotri2edgeList.R R/make_key.R R/massGAM.R R/massGLAM.R R/massGLM.R R/massUni.R R/matchCasesByRules.R R/matchcases.R R/mergelongtreatment.R R/meta_mod.R R/mhist.R R/mlegend.R R/mod_error.R R/mplot3_adsr.R R/mplot3_bar.R R/mplot3_box.R R/mplot3_conf.R R/mplot3_confbin.R R/mplot3_decision.R R/mplot3_fret.R R/mplot3_graph.R R/mplot3_harmonograph.R R/mplot3_heatmap.R R/mplot3_img.R R/mplot3_laterality.R R/mplot3_lolli.R R/mplot3_missing.R R/mplot3_mosaic.R R/mplot3_pr.R R/mplot3_prp.R R/mplot3_res.R R/mplot3_roc.R R/mplot3_surv.R R/mplot3_survfit.R R/mplot3_varimp.R R/mplot3_x.R R/mplot3_xy.R R/mplot3_xym.R R/mplot_AGGTEobj.R R/mplot_hsv.R R/mplot_raster.R R/msg.R R/multigplot.R R/nCr.R R/nlareg.R R/nullmod.R R/oddsratio.R R/oddsratiotable.R R/oneHot.R R/onehot2factor.R R/padnums.R R/palettes.R R/permute.R R/pfread.R R/plot_ops.R R/plotly.heat.R R/plotly_ops.R R/prepare_data.R R/preprocess.R R/preprocess_.R R/present.R R/present_gridsearch.R R/previewcolor.R R/print_ops.R R/prune.addtree.R R/prune.rpart.rt.R R/read.R R/recycle.R R/resLearn.R R/resample.R R/reverseLevels.R R/revfactorlevels.R R/rfVarSelect.R R/rsd.R R/rstudio_theme_rtemis.R R/rtClust.R R/rtDecom.R R/rtInitProjectDir.R R/rtMod.R R/rtModLog.R R/rtModSet.R R/rtROC.R R/rtXDecom.R R/rt_init.R R/rt_io.R R/rt_ops.R R/rt_reactable.R R/rtlayout.R R/ruleDist.R R/rule_ops.R R/rules2medmod.R R/s_AdaBoost.R R/s_AddTree.R R/s_BART.R R/s_BRUTO.R R/s_BayesGLM.R R/s_C50.R R/s_CART.R R/s_CTree.R R/s_EVTree.R R/s_GAM.R R/s_GBM.R R/s_GLM.R R/s_GLMNET.R R/s_GLMTree.R R/s_GLS.R R/s_H2ODL.R R/s_H2OGBM.R R/s_H2ORF.R R/s_HAL.R R/s_Isotonic.R R/s_KNN.R R/s_LDA.R R/s_LIHAD.R R/s_LIHADBoost.R R/s_LINAD.R R/s_LINOA.R R/s_LM.R R/s_LMTree.R R/s_LOESS.R R/s_LightCART.R R/s_LightGBM.R R/s_LightRuleFit.R R/s_MARS.R R/s_MLRF.R R/s_NBayes.R R/s_NLA.R R/s_NLS.R R/s_NW.R R/s_PPR.R R/s_PSurv.R R/s_PolyMARS.R R/s_QDA.R R/s_QRNN.R R/s_RF.R R/s_RFSRC.R R/s_Ranger.R R/s_RuleFit.R R/s_SDA.R R/s_SGD.R R/s_SPLS.R R/s_SVM.R R/s_TFN.R R/s_TLS.R R/s_XGBoost.R R/s_XRF.R R/savePMML.R R/se.R R/select_clust.R R/select_decom.R R/select_learn.R R/select_xdecom.R R/selectiter.R R/seql.R R/setdiffsym.R R/setup.R R/sge_submit.R R/shyoptleaves.R R/size.R R/sortedlines.R R/sparseVectorSummary.R R/sparsernorm.R R/sparsify.R R/splitline.R R/stderror.R R/strata2factor.R R/strict.R R/strng.R R/summarize.R R/super_ops.R R/survError.R R/svd1.R R/synth_multimodal.R R/synth_reg_data.R R/table1.R R/theme.R R/timeProc.R R/train_cv.R R/type_check.R R/typeset.R R/uniprot_get.R R/winsorize.R R/x_CCA.R R/xlsx2list.R R/xtdescribe.R R/zip_ops.R R/zzz.R README.md
data/uci_heart_failure.rda
inst/CITATION
inst/extdata/us-counties.json
inst/extdata/us-states.json
inst/resources/aminoacids.rds
inst/resources/rtemis.rstheme
inst/resources/rtemis_logo.utf8
inst/rstudio/addins.dcf
man/any_constant.Rd man/as.data.tree.linadleaves.Rd man/as.data.tree.rpart.Rd man/as.data.tree.shyoptleaves.Rd man/auc.Rd man/auc_pairs.Rd man/bacc.Rd man/betas.lihad.Rd man/bias_variance.Rd man/binmat2vec.Rd man/boost.Rd man/bootstrap.Rd man/brier_score.Rd man/c_CMeans.Rd man/c_DBSCAN.Rd man/c_EMC.Rd man/c_H2OKMeans.Rd man/c_HARDCL.Rd man/c_HOPACH.Rd man/c_KMeans.Rd man/c_MeanShift.Rd man/c_NGAS.Rd man/c_PAM.Rd man/c_PAMK.Rd man/c_SPEC.Rd man/calibrate.Rd man/calibrate_cv.Rd man/cartLiteBoostTV.Rd man/catrange.Rd man/catsize.Rd man/check_data.Rd man/check_files.Rd man/checkpoint_earlystop.Rd man/chill.Rd man/class_error.Rd man/class_imbalance.Rd man/clean_colnames.Rd man/clean_names.Rd man/clust.Rd man/coef.lihad.Rd man/col2grayscale.Rd man/col2hex.Rd man/colMax.Rd man/colorAdjust.Rd man/colorGrad.Rd man/colorGrad.x.Rd man/colorMix.Rd man/colorOp.Rd man/color_fade.Rd man/color_invertRGB.Rd man/color_mean.Rd man/color_order.Rd man/color_separate.Rd man/color_sqdist.Rd man/colorgradient.x.Rd man/cols2list.Rd man/create_config.Rd man/crules.Rd man/d_H2OAE.Rd man/d_H2OGLRM.Rd man/d_ICA.Rd man/d_Isomap.Rd man/d_KPCA.Rd man/d_LLE.Rd man/d_MDS.Rd man/d_NMF.Rd man/d_PCA.Rd man/d_SPCA.Rd man/d_SVD.Rd man/d_TSNE.Rd man/d_UMAP.Rd man/dat2bsplinemat.Rd man/dat2poly.Rd man/date2factor.Rd man/date2ym.Rd man/date2yq.Rd man/dates2features.Rd man/ddSci.Rd man/ddb_collect.Rd man/ddb_data.Rd man/decom.Rd man/dependency_check.Rd man/desaturate.Rd man/describe.Rd man/df_movecolumn.Rd man/distillTreeRules.Rd man/dplot3_addtree.Rd man/dplot3_bar.Rd man/dplot3_box.Rd man/dplot3_calibration.Rd man/dplot3_cart.Rd man/dplot3_conf.Rd man/dplot3_fit.Rd man/dplot3_graphd3.Rd man/dplot3_graphjs.Rd man/dplot3_heatmap.Rd man/dplot3_leaflet.Rd man/dplot3_linad.Rd man/dplot3_pie.Rd man/dplot3_protein.Rd man/dplot3_pvals.Rd man/dplot3_spectrogram.Rd man/dplot3_table.Rd man/dplot3_ts.Rd man/dplot3_varimp.Rd man/dplot3_volcano.Rd man/dplot3_x.Rd man/dplot3_xt.Rd man/dplot3_xy.Rd man/dplot3_xyz.Rd man/drange.Rd man/dt_check_unique.Rd man/dt_describe.Rd man/dt_get_column_attr.Rd man/dt_get_duplicates.Rd man/dt_get_factor_levels.Rd man/dt_index_attr.Rd man/dt_inspect_type.Rd man/dt_keybin_reshape.Rd man/dt_merge.Rd man/dt_names_by_attr.Rd man/dt_names_by_class.Rd man/dt_pctmatch.Rd man/dt_pctmissing.Rd man/dt_set_autotypes.Rd man/dt_set_clean_all.Rd man/dt_set_cleanfactorlevels.Rd man/dt_set_logical2factor.Rd man/earlystop.Rd man/error.Rd man/expand.boost.Rd man/explain.Rd man/f1.Rd man/factor_NA2missing.Rd man/factor_harmonize.Rd man/factoryze.Rd man/fct_describe.Rd man/format.call.Rd man/formatLightRules.Rd man/formatRules.Rd man/fwhm2sigma.Rd man/get-names.Rd man/get_holidays.Rd man/get_loaded_pkg_version.Rd man/get_mode.Rd man/get_rules.Rd man/get_vars_from_rules.Rd man/getnames.Rd man/getnamesandtypes.Rd man/ggtheme_dark.Rd man/ggtheme_light.Rd man/glmLite.Rd man/gmean.Rd man/gp.Rd man/grapes-BC-grapes.Rd man/graph_node_metrics.Rd man/gridCheck.Rd man/gtTable.Rd man/htest.Rd man/inherits_check.Rd man/inherits_test.Rd man/inspect_type.Rd man/invlogit.Rd man/is_check.Rd man/is_constant.Rd man/is_discrete.Rd man/is_test.Rd man/kfold.Rd man/labelify.Rd man/lincoef.Rd man/list2csv.Rd man/logistic.Rd man/logit.Rd man/logloss.Rd man/loocv.Rd man/lotri2edgeList.Rd man/lsapply.Rd man/make_key.Rd man/massGAM.Rd man/massGLAM.Rd man/massGLM.Rd man/massUni.Rd man/matchcases.Rd man/mergelongtreatment.Rd man/meta_mod.Rd man/mgetnames.Rd man/mhist.Rd man/mlegend.Rd man/mod_error.Rd man/mplot3_adsr.Rd man/mplot3_bar.Rd man/mplot3_box.Rd man/mplot3_conf.Rd man/mplot3_confbin.Rd man/mplot3_decision.Rd man/mplot3_fit.Rd man/mplot3_fret.Rd man/mplot3_graph.Rd man/mplot3_harmonograph.Rd man/mplot3_heatmap.Rd man/mplot3_img.Rd man/mplot3_laterality.Rd man/mplot3_lolli.Rd man/mplot3_missing.Rd man/mplot3_mosaic.Rd man/mplot3_pr.Rd man/mplot3_prp.Rd man/mplot3_res.Rd man/mplot3_roc.Rd man/mplot3_surv.Rd man/mplot3_survfit.Rd man/mplot3_varimp.Rd man/mplot3_x.Rd man/mplot3_xy.Rd man/mplot3_xym.Rd man/mplot_AGGTEobj.Rd man/mplot_hsv.Rd man/mplot_raster.Rd man/multigplot.Rd man/nCr.Rd man/nlareg.Rd man/nunique_perfeat.Rd man/oddsratio.Rd man/oddsratiotable.Rd man/oneHot.Rd man/onehot2factor.Rd man/palettize.Rd man/permute.Rd man/pfread.Rd man/plot.massGAM.Rd man/plot.massGLM.Rd man/plot.resample.Rd man/plot.rtModCVCalibration.Rd man/plot.rtTest.Rd man/plotly.heat.Rd man/precision.Rd man/predict.LightRuleFit.Rd man/predict.addtree.Rd man/predict.boost.Rd man/predict.cartLite.Rd man/predict.cartLiteBoostTV.Rd man/predict.glmLite.Rd man/predict.glmLiteBoostTV.Rd man/predict.hytboost.Rd man/predict.hytboostnow.Rd man/predict.hytreenow.Rd man/predict.hytreew.Rd man/predict.lihad.Rd man/predict.linadleaves.Rd man/predict.nlareg.Rd man/predict.nullmod.Rd man/predict.rtBSplines.Rd man/predict.rtModCVCalibration.Rd man/predict.rtTLS.Rd man/predict.rulefit.Rd man/preorderlgb.Rd man/preprocess.Rd man/preprocess_.Rd man/present.Rd man/present_gridsearch.Rd man/previewcolor.Rd man/print.CheckData.Rd man/print.addtree.Rd man/print.boost.Rd man/print.cartLiteBoostTV.Rd man/print.class_error.Rd man/print.glmLiteBoostTV.Rd man/print.gridSearch.Rd man/print.hytboost.Rd man/print.hytboostnow.Rd man/print.lihad.Rd man/print.linadleaves.Rd man/print.massGAM.Rd man/print.massGLM.Rd man/print.regError.Rd man/print.resample.Rd man/print.rtBiasVariance.Rd man/print.rtTLS.Rd man/print.surv_error.Rd man/prob2categorical.Rd man/prune.addtree.Rd man/psd.Rd man/qstat.Rd man/read.Rd man/read_config.Rd man/recycle.Rd man/reg_error.Rd man/relu.Rd man/resample.Rd man/reverseLevels.Rd man/revfactorlevels.Rd man/rfVarSelect.Rd man/rnormmat.Rd man/rowMax.Rd man/rsd.Rd man/rsq.Rd man/rstudio_theme_rtemis.Rd man/rtClust-methods.Rd man/rtDecom-methods.Rd man/rtInitProjectDir.Rd man/rtMeta-methods.Rd man/rtMod-methods.Rd man/rtModBag-methods.Rd man/rtModCV-methods.Rd man/rtModClass-class.Rd man/rtModLite-methods.Rd man/rtModLog-class.Rd man/rtModLogger-class.Rd man/rtPalettes.Rd man/rtROC.Rd man/rtXDecom-class.Rd man/rt_reactable.Rd man/rt_save.Rd man/rtemis-package.Rd man/rtemis_init.Rd man/rtemis_palette.Rd man/rtlayout.Rd man/rtpalette.Rd man/rtset.Rd man/rtversion.Rd man/ruleDist.Rd man/rules2medmod.Rd man/runifmat.Rd man/s_AdaBoost.Rd man/s_AddTree.Rd man/s_BART.Rd man/s_BRUTO.Rd man/s_BayesGLM.Rd man/s_C50.Rd man/s_CART.Rd man/s_CTree.Rd man/s_EVTree.Rd man/s_GAM.Rd man/s_GBM.Rd man/s_GLM.Rd man/s_GLMNET.Rd man/s_GLMTree.Rd man/s_GLS.Rd man/s_H2ODL.Rd man/s_H2OGBM.Rd man/s_H2ORF.Rd man/s_HAL.Rd man/s_Isotonic.Rd man/s_KNN.Rd man/s_LDA.Rd man/s_LIHAD.Rd man/s_LIHADBoost.Rd man/s_LINAD.Rd man/s_LINOA.Rd man/s_LM.Rd man/s_LMTree.Rd man/s_LOESS.Rd man/s_LightCART.Rd man/s_LightGBM.Rd man/s_LightRF.Rd man/s_LightRuleFit.Rd man/s_Logistic.Rd man/s_MARS.Rd man/s_MLRF.Rd man/s_MULTINOM.Rd man/s_NBayes.Rd man/s_NLA.Rd man/s_NLS.Rd man/s_NW.Rd man/s_POLY.Rd man/s_PPR.Rd man/s_PSurv.Rd man/s_PolyMARS.Rd man/s_QDA.Rd man/s_QRNN.Rd man/s_RF.Rd man/s_RFSRC.Rd man/s_RLM.Rd man/s_Ranger.Rd man/s_RuleFit.Rd man/s_SDA.Rd man/s_SGD.Rd man/s_SPLS.Rd man/s_SVM.Rd man/s_TFN.Rd man/s_TLS.Rd man/s_XGBoost.Rd man/s_XRF.Rd man/savePMML.Rd man/se.Rd man/select_clust.Rd man/select_decom.Rd man/select_learn.Rd man/selectiter.Rd man/sensitivity.Rd man/seql.Rd man/setdiffsym.Rd man/setup.GBM.Rd man/setup.LIHAD.Rd man/setup.LightRuleFit.Rd man/setup.MARS.Rd man/setup.Ranger.Rd man/setup.bag.resample.Rd man/setup.color.Rd man/setup.cv.resample.Rd man/setup.decompose.Rd man/setup.earlystop.Rd man/setup.grid.resample.Rd man/setup.lincoef.Rd man/setup.meta.resample.Rd man/setup.preprocess.Rd man/setup.resample.Rd man/sge_submit.Rd man/sigmoid.Rd man/size.Rd man/softmax.Rd man/softplus.Rd man/sortedlines.Rd man/sparseVectorSummary.Rd man/sparsernorm.Rd man/sparsify.Rd man/specificity.Rd man/stderror.Rd man/strat.boot.Rd man/strat.sub.Rd man/strata2factor.Rd man/strict.Rd man/strng.Rd man/summarize.Rd man/summary.massGAM.Rd man/summary.massGLM.Rd man/surv_error.Rd man/svd1.Rd man/synth_multimodal.Rd man/synth_reg_data.Rd man/table1.Rd man/theme.Rd man/themes.Rd man/timeProc.Rd man/tohtml.Rd man/train_cv.Rd man/tunable.Rd man/typeset.Rd man/uci_heart_failure.Rd man/uniprot_get.Rd man/uniquevalsperfeat.Rd man/winsorize.Rd man/x_CCA.Rd man/xlsx2list.Rd man/xselect_decom.Rd man/xtdescribe.Rd man/zip2longlat.Rd man/zipdist.Rd tests/testthat.R tests/testthat/factoryze_tests.R tests/testthat/interactiveGraphics_tests.R tests/testthat/lincoef_tests.R tests/testthat/metaLearning_tests.R tests/testthat/read_tests.R tests/testthat/staticGraphics_tests.R tests/testthat/test-Clustering.R tests/testthat/test-Crossdecomposition.R tests/testthat/test-Decomposition.R tests/testthat/test-Interactive_Graphics.R tests/testthat/test-Static_Graphics.R tests/testthat/test-Supervised.R tests/testthat/test-TrainCV.R tests/testthat/test-massGLM.R tests/testthat/var_tests.R
egenn/rtemis documentation built on Dec. 17, 2024, 6:16 p.m.