Files in egonw/rWikiPathways

rWikiPathways - R client library for the WikiPathways API

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/downloadPathwayArchive.R R/findPathwayByText.R R/findPathwaysByLiterature.R R/findPathwaysByXref.R R/getColoredPathway.R R/getCurationTags.R R/getOntologyTerms.R R/getPathway.R R/getPathwayHistory.R R/getPathwayInfo.R R/getRecentChanges.R R/getXrefList.R R/listOrganisms.R R/listPathways.R R/readGMT.R R/readPathwayGMT.R R/utilities.R R/writeGMT.R README.md

docs/404.html

docs/LICENSE-text.html

docs/articles/Overview.html

docs/articles/Overview_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/Pathway-Analysis.html

docs/articles/Pathway-Analysis_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/index.html

docs/articles/rWikiPathways-and-BridgeDbR.html

docs/articles/rWikiPathways-and-BridgeDbR_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/rWikiPathways-and-RCy3.html

docs/articles/rWikiPathways-and-RCy3_files/accessible-code-block-0.0.1/empty-anchor.js

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/downloadPathwayArchive.html

docs/reference/findPathwayIdsByLiterature.html

docs/reference/findPathwayIdsByText.html

docs/reference/findPathwayIdsByXref.html

docs/reference/findPathwayNamesByLiterature.html

docs/reference/findPathwayNamesByText.html

docs/reference/findPathwayNamesByXref.html

docs/reference/findPathwayUrlsByLiterature.html

docs/reference/findPathwayUrlsByText.html

docs/reference/findPathwayUrlsByXref.html

docs/reference/findPathwaysByLiterature.html

docs/reference/findPathwaysByText.html

docs/reference/findPathwaysByXref.html

docs/reference/getColoredPathway.html

docs/reference/getCurationTagNames.html

docs/reference/getCurationTags.html

docs/reference/getEveryCurationTag.html

docs/reference/getOntologyTermIds.html

docs/reference/getOntologyTermNames.html

docs/reference/getOntologyTerms.html

docs/reference/getPathway.html

docs/reference/getPathwayHistory.html

docs/reference/getPathwayIdsByCurationTag.html

docs/reference/getPathwayIdsByOntologyTerm.html

docs/reference/getPathwayIdsByParentOntologyTerm.html

docs/reference/getPathwayInfo.html

docs/reference/getPathwaysByCurationTag.html

docs/reference/getPathwaysByOntologyTerm.html

docs/reference/getPathwaysByParentOntologyTerm.html

docs/reference/getRecentChanges.html

docs/reference/getRecentChangesIds.html

docs/reference/getRecentChangesNames.html

docs/reference/getXrefList.html

docs/reference/index.html

docs/reference/listOrganisms.html

docs/reference/listPathwayIds.html

docs/reference/listPathwayNames.html

docs/reference/listPathwayUrls.html

docs/reference/listPathways.html

docs/reference/myGmtFile.gmt

docs/reference/readPathwayGMT.html

docs/reference/wikipathways-20171010-svg-Mus_musculus.zip

docs/reference/wikipathways-20200210-gpml-Mus_musculus.zip

docs/reference/wikipathways-20210110-gpml-Mus_musculus.zip

docs/reference/wikipathwaysAPI.html

docs/reference/wikipathwaysGET.html

docs/reference/writeGMT.html

inst/CITATION

inst/extdata/data-lung-cancer.csv

inst/extdata/drugbank-5.1.0.xgmml.zip

inst/extdata/my_gmt_file.gmt

inst/extdata/wikipathways-20201010-gmt-Homo_sapiens.gmt

man/downloadPathwayArchive.Rd man/findPathwayIdsByLiterature.Rd man/findPathwayIdsByText.Rd man/findPathwayIdsByXref.Rd man/findPathwayNamesByLiterature.Rd man/findPathwayNamesByText.Rd man/findPathwayNamesByXref.Rd man/findPathwayUrlsByLiterature.Rd man/findPathwayUrlsByText.Rd man/findPathwayUrlsByXref.Rd man/findPathwaysByLiterature.Rd man/findPathwaysByText.Rd man/findPathwaysByXref.Rd man/getColoredPathway.Rd man/getCurationTagNames.Rd man/getCurationTags.Rd man/getEveryCurationTag.Rd man/getOntologyTermIds.Rd man/getOntologyTermNames.Rd man/getOntologyTerms.Rd man/getPathway.Rd man/getPathwayHistory.Rd man/getPathwayIdsByCurationTag.Rd man/getPathwayIdsByOntologyTerm.Rd man/getPathwayIdsByParentOntologyTerm.Rd man/getPathwayInfo.Rd man/getPathwaysByCurationTag.Rd man/getPathwaysByOntologyTerm.Rd man/getPathwaysByParentOntologyTerm.Rd man/getRecentChanges.Rd man/getRecentChangesIds.Rd man/getRecentChangesNames.Rd man/getXrefList.Rd man/listOrganisms.Rd man/listPathwayIds.Rd man/listPathwayNames.Rd man/listPathwayUrls.Rd man/listPathways.Rd man/readGMT.Rd man/readGMTnames.Rd man/readPathwayGMT.Rd man/wikipathwaysAPI.Rd man/wikipathwaysGET.Rd man/writeGMT.Rd

rwikipathways.Rproj

tests/testthat.R tests/testthat/test-findPathwaysByLiterature.R tests/testthat/test-findPathwaysByText.R tests/testthat/test-findPathwaysByXref.R tests/testthat/test-getCurationTags.R tests/testthat/test-getOntologyTerms.R tests/testthat/test-getPathway.R tests/testthat/test-getPathwayHistory.R tests/testthat/test-getPathwayInfo.R tests/testthat/test-getRecentChanges.R tests/testthat/test-getXrefList.R tests/testthat/test-listOrganisms.R tests/testthat/test-listPathways.R

vignettes/Overview-schema.html

vignettes/Overview.Rmd

vignettes/Pathway-Analysis-schema.html

vignettes/Pathway-Analysis.Rmd

vignettes/biomed-central.csl

vignettes/rWikiPathways-and-BridgeDbR-schema.html

vignettes/rWikiPathways-and-BridgeDbR.Rmd

vignettes/rWikiPathways-and-RCy3-schema.html

vignettes/rWikiPathways-and-RCy3.Rmd

vignettes/tutorial.bib

egonw/rWikiPathways documentation built on May 10, 2021, 11:52 a.m.