findPathwaysByXref: Find Pathways By Xref

In egonw/rWikiPathways: rWikiPathways - R client library for the WikiPathways API

Description

Retrieve pathways containing the query Xref by identifier and system code.

Usage

findPathwaysByXref(identifier, systemCode)

Arguments

identifier	(character) The official ID specified by a data source or system
systemCode	(character) The BridgeDb code associated with the data source or system, e.g., En (Ensembl), L (Entrez), Ch (HMDB), etc. See column two of https://github.com/bridgedb/BridgeDb/blob/master/org.bridgedb.bio/src/main/resources/org/bridgedb/bio/datasources.tsv.

Details

Note: there will be multiple listings of the same pathway if the Xref is present mutiple times.

The score is from a lucene index search engine, ranging from 0 to 1 with higher scores for better matches.

Value

A dataframe of pathway attributes in addition to query result score

Examples

{
findPathwaysByXref('ENSG00000232810','En')
}

egonw/rWikiPathways documentation built on May 10, 2021, 11:52 a.m.