readGMT: Read GMT File
In egonw/rWikiPathways: rWikiPathways - R client library for the WikiPathways API
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Reads any generic GMT file to produce a data frame of
term-gene associations useful in enrichment analyses and other
applications.
Usage
1
Arguments
file
Path to GMT file
Details
The returned data frame includes only terms and genes. If you want
another data frame with terms and names, then see readGMTnames.
Value
Data frame of term-gene associations
See Also
readGMTnames
Examples
1
readGMT(system.file("extdata","my_gmt_file.gmt", package="rWikiPathways"))
egonw/rWikiPathways documentation built on May 10, 2021, 11:52 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
Reads any generic GMT file to produce a data frame of term-gene associations useful in enrichment analyses and other applications.
Usage
1 |
Arguments
file |
Path to GMT file |
Details
The returned data frame includes only terms and genes. If you want another data frame with terms and names, then see readGMTnames.
Value
Data frame of term-gene associations
See Also
readGMTnames
Examples
1 | readGMT(system.file("extdata","my_gmt_file.gmt", package="rWikiPathways"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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