Man pages for ehfhcrc/ImmSigPkg
Run HIPC ImmuneSignatures Pipeline from ImmuneSpace data
| capwords | - title: "HIPC Datasets - Processing" author: "Renaud Gaujoux... |
| combine_hai_data | Function creates combined hai table and rds file from all six... |
| getSDY | Function loads hipc eset objects from rds files and performs... |
| hipc_full_pipeline | Runs full pipeline from start to finish with user input... |
| hipc_make_rds | Generates rds objects from studies given the study names and... |
| hipc_meta_analysis | Perform HIPC Meta Analysis using given parameters |
| hipc_preprocess | Generates TSV text tables for use in the hipc pipeline from... |
| makeDemo | Function to generate demographic data table from ImmuneSpace... |
| makeGE | Function to generate Gene Expression Table from ImmuneSpace... |
| makeHAI | Function to generate HAI data table from ImmuneSpace... |
| make_rds | Function to generate expressionSet object and save as Rds... |
| meta_analysis | Function to perform meta analysis for HIPC ImmuneSignatures... |
