hipc_meta_analysis: Perform HIPC Meta Analysis using given parameters
In ehfhcrc/ImmSigPkg: Run HIPC ImmuneSignatures Pipeline from ImmuneSpace data
Description
Takes in various parameters related to the cutoff points for gene pathway selection, HAI endpoint selection,
adjustments to gene expression data, and output types.
Usage
1
hipc_meta_analysis(rds_dir, cohort, orig_params = T, output_dir)
Arguments
rds_dir
the path for the directory holding the RDS files with esets of each study
cohort
the age cohort, either 'young' or 'old', to use in analysis
orig_params
a boolean that defaults to TRUE, but when set to false allows the user to specify non-original parameters for the analysis
output_dir
the path for the pdf and text outputs of the analysis
ehfhcrc/ImmSigPkg documentation built on May 16, 2019, 12:16 a.m.
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Description
Takes in various parameters related to the cutoff points for gene pathway selection, HAI endpoint selection, adjustments to gene expression data, and output types.
Usage
1 | hipc_meta_analysis(rds_dir, cohort, orig_params = T, output_dir)
|
Arguments
rds_dir |
the path for the directory holding the RDS files with esets of each study |
cohort |
the age cohort, either 'young' or 'old', to use in analysis |
orig_params |
a boolean that defaults to TRUE, but when set to false allows the user to specify non-original parameters for the analysis |
output_dir |
the path for the pdf and text outputs of the analysis |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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