Files in ehfhcrc/ImmSigPkg
Run HIPC ImmuneSignatures Pipeline from ImmuneSpace data
.Rbuildignore
.gitignore
DESCRIPTION
ImmSigPkg.Rproj
NAMESPACE
R/EH_MakeDemo_f.R
R/EH_MakeGE_f.R
R/EH_MakeHAI_f.R
R/HIPCMetaModuleAnalysis_v2_f.R
R/datasets_v2_EH_f.R
R/getSDY_f.R
R/run_HIPC_analysis_f.R
README.md
data/SDY212_IDmap.rda
data/SDY400_IDmap.rda
data/SDY404_IDmap.rda
data/SDY63_IDmap.rda
data/SDY63_anno_tbl.rda
data/SDY67_exp_map.rda
data/SDY80_IDmap.rda
data/SDY80_orig_anno.rda
data/SDY80_rawtiterdata.rda
data/SDY80_rawtiterdata_v2.rda
data/geneSetDB.rda
data/ilv4_anno_tbl.rda
data/orig_400_GE.rda
data/orig_chi_GE.rda
data/orig_chi_demo.rda
data/orig_chi_hai.rda
data/orig_disc_old.rda
data/orig_disc_young.rda
data/orig_val_old.rda
data/orig_val_young.rda
man/capwords.Rd
man/combine_hai_data.Rd
man/getSDY.Rd
man/hipc_full_pipeline.Rd
man/hipc_make_rds.Rd
man/hipc_meta_analysis.Rd
man/hipc_preprocess.Rd
man/makeDemo.Rd
man/makeGE.Rd
man/makeHAI.Rd
man/make_rds.Rd
man/meta_analysis.Rd
vignettes/Manuscript_Pipeline.Rmd
