makeGE: Function to generate Gene Expression Table from ImmuneSpace...
In ehfhcrc/ImmSigPkg: Run HIPC ImmuneSignatures Pipeline from ImmuneSpace data
Description
Function to generate Gene Expression Table from ImmuneSpace Connection
Usage
1
2
makeGE(sdy, yale.anno = "original", sdy80.anno = "original",
sdy80.norm = F, output_dir, rawdata_dir)
Arguments
sdy
study
yale.anno
Yale Studies gene symbol annotation original, library, or manifest
sdy80.anno
SDY80 gene symbol annotation original or library
sdy80.norm
normalize SDY80 expression values according to pipeline, default FALSE
output_dir
output directory
rawdata_dir
directory for holding rawdata downloads
ehfhcrc/ImmSigPkg documentation built on May 16, 2019, 12:16 a.m.
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Description
Function to generate Gene Expression Table from ImmuneSpace Connection
Usage
1 2 | makeGE(sdy, yale.anno = "original", sdy80.anno = "original",
sdy80.norm = F, output_dir, rawdata_dir)
|
Arguments
sdy |
study |
yale.anno |
Yale Studies gene symbol annotation original, library, or manifest |
sdy80.anno |
SDY80 gene symbol annotation original or library |
sdy80.norm |
normalize SDY80 expression values according to pipeline, default FALSE |
output_dir |
output directory |
rawdata_dir |
directory for holding rawdata downloads |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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