Description Usage Arguments Details References Examples
Add links from two sets of genomic positions
1 2 3 |
region1 |
A genomic data frame |
region2 |
A genomic data frame |
rou |
Pass to |
rou1 |
Pass to |
rou2 |
Pass to |
col |
Pass to |
lwd |
Pass to |
lty |
Pass to |
border |
Pass to |
... |
Pass to |
Of course, number of rows should be same in region1
and region2
.
If you want to have more controls on links, please use circos.link
directly.
Gu, Z. (2014) circlize implements and enhances circular visualization in R. Bioinformatics.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ## Not run:
set.seed(123)
bed1 = generateRandomBed(nr = 100)
bed1 = bed1[sample(nrow(bed1), 20), ]
bed2 = generateRandomBed(nr = 100)
bed2 = bed2[sample(nrow(bed2), 20), ]
circos.par("track.height" = 0.1, cell.padding = c(0, 0, 0, 0))
circos.initializeWithIdeogram()
circos.genomicLink(bed1, bed2, col = sample(1:5, 20, replace = TRUE), border = NA)
circos.clear()
## End(Not run)
|
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