Description Usage Arguments Details References Examples
Get information of the circular plot
1 | circos.info(sector.index = NULL, track.index = NULL, plot = FALSE)
|
sector.index |
Which sectors you want to look at? It can be a vector. |
track.index |
Which tracks you want to look at? It can be a vector. |
plot |
Whether to add information on the plot |
It tells you the basic parameters for sectors/tracks/cells. If both sector.index
and track.index
are set to NULL
, the function would print index for
all sectors and all tracks. If sector.index
and/or track.index
are set,
the function would print xlim
, ylim
, cell.xlim
, cell.ylim
,
xplot
, yplot
, track.margin
and cell.padding
for every cell in specified sectors and tracks.
Also, the function will print index of your current sector and current track.
If plot
is set to TRUE
, the function will plot the index of the sector and the track
for each cell on the figure.
Gu, Z. (2014) circlize implements and enhances circular visualization in R. Bioinformatics.
1 2 3 4 5 6 7 8 9 10 11 12 | factors = letters[1:4]
circos.initialize(factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1))
circos.info(sector.index = "a", track.index = 1)
circos.info(sector.index = "a", track.index = 1:2)
circos.info(sector.index = c("a", "b"), track.index = 1)
circos.info(sector.index = "a")
circos.info(track.index = 1)
circos.info()
circos.info(plot = TRUE)
circos.clear()
|
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