align_ssb_r | Align stock and recruitment data |
apply.shrink | apply.shrink |
bevholt_srmsymc | bevholt_srmsymc |
calc.quantiles | Calculate quantiles |
cn_keys | XX |
compile_admb2 | Compile admb code |
d2r | Converts lat and lon to statistical squares |
date_2_qyear | Converts date to correponding quota year |
date_2_qyear_start | Converts date to first date (1. september) of each quota year |
do_ggplot | Do a ggplot |
fishvise-package | Title Fishvice package |
FLStock2rbya | Convert FLStock (or FLSAM) object long data.frame |
get_file | get_file |
get_fit_sam | get_fit_sam |
get_sam | get_sam |
gJoin | gJoin |
grep2 | grep2 |
hcr_dynamic_plot | XXX |
hcr_equilibrium_plot | XXX |
hcr_implementation_model_1 | Add implementation error to TAC |
hcr_management_bio | Biomass-based Harvest Control Rule |
hcr_management_effort | Effort type management |
hcr_management_fmort | F-based Harvest Control Rule |
hcr_observation_error | Observation error model |
hcr_operating_model | Operating model |
hcr_operating_model2 | Operating model2 |
hcr_read_ctr | HCR - Read control file |
hcr_read_startfile | HCR: Reading starting years input from file |
hcr_recruitment_model | HCR recruitment model |
hcr_recruitment_model2 | hcr_recruitment_model2 |
hcr_set_assErrors | HCR: Setup of assessment errors |
hcr_set_dimensions | Initial HCR objects |
hcr_set_recErrors | HCR: Setup of recruitment error structure |
hcr_set_recErrors2 | HCR: Setup of recruitment error structure |
hcr_set_starting_conditions | HCR: Set starting condition for stock |
hcr_set_wgtErrors | HCR: Setup of weight error structure |
hcr_summarise_data | XXX |
hcr_TAC_to_Fmult | hcr_TAC_to_Fmult |
i50 | Calculate quantiles |
i80 | Calculate quantiles |
i90 | Calculate quantiles |
iconvDF | Converts character columns in a 'data.frame' between... |
mac_srest_cat | Write srest.dat to disk |
mb_gridGMT | Gridding data using nearneighbor gmt function |
mb_sql | SQL function for reading SQLite database |
process_error_sam | process_error_sam |
r2d | Converts statistical squares to degrees |
Rattach | Rattach |
read_adapt | Reads 'adapt' assessment results |
read_adcam | Reads 'adcam' assessment results |
read_conf_sam | read_conf_sam |
read_fit_sam | read_fit_sam |
read_ibya_lowestoft | read_ibya_lowestoft |
read_lowestoft | Read in Lowestoft-format VPA data |
read_lowestoft2 | read_lowestoft2 |
read_lowestoft_file | read_lowestoft_file |
read_lowestoft_survey | Read in Lowestoft-format survey data |
read_prelude | Reads prelude-files |
read_rby | Reads results-by-year (sum file) |
read_rbya | Reads results-by-year-and-age |
read_rbya_sam | read_rbya_sam |
read_rbya_tasac | read_rbya_tasac |
read_rby_sam | read_rby_sam |
read_sam | read_sam |
read_sen | Read .sen file |
read_separ | Reads 'separable' assessment results |
recruit1 | Hockey stick recruitment model |
recruit2 | Bootstrap model |
replace.text | Replace characters |
residplot | residplot |
ricker_srmsymc | ricker_srmsymc |
rvk2FLStock | Convert rvk-format to FLStock object |
rvk2icesxml | rvk2icesxml |
sdev | sdev |
segreg_srmsymc | segreg_srmsymc |
sr2d | Converts small statistical squares to degrees |
sr2lim | Set the limits for small statistical squares |
standard_attribute_list | Standard attribute structure |
str_trim_commas | Trim 'commas' from start and end of string |
str_trim_tab | Trim 'tabs' from start and end of string |
trim_shape_df | trim_shape_df |
wget_sam_run | wget_sam_run |
write_prelude | Writes prelude-file |
ypr | ypr |
ypr_single_target | ypr |
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