read_rby: Reads results-by-year (sum file)

In einarhjorleifsson/fishvise: Miscalaneous set of functions related fish stock assessment work

Description

Reads a stock summary file in table format and returns it as a data frame.

Usage

read_rby(file, format = "rvk", cn = c("year", "r", "refB", "ssb", "oY",
  "pY", "refF", "hr", "oI1", "pI1", "oI2", "pI2"), info = FALSE,
  name_stock = NA, yAss = NA, aR = NA, aF = c(NA, NA), Run = NA,
  Model = NA)

Arguments

file	If it does not contain an absolute path, the file name is relative to the current working directory, getwd().
format	Character specifying the origin of the input file. So far implemented "rvk" and "abd" format.
cn	Names of columns to return for "rvk" format.
info	boolean. If FALSE (default) only data.frame with XXX returned. If TRUE a list containing the data.frame and a list containing the additional information is returned. See return for additional XXX.
name_stock	character. Stock name.
yAss	integer. Assessment year
aR	integer. Age of recruitment.
aF	vector. Elements contain youngest and oldest age used to calculate the reference fishing mortality.
Run	Run name (spring survey, fall survey, both surveys, etc ..)
Model	Model name (Adcam, Adapt, Separable, etc ..)

Examples

file <- paste(path.package("fishvise"),'extdata/resultsbyyear',sep='/')
read_rby(file)

file <- paste(path.package("fishvise"),'extdata/NSH.sum',sep='/')
read_rby(file,format="abd")

einarhjorleifsson/fishvise documentation built on May 16, 2019, 1:26 a.m.