Man pages for emvolz-phylodynamics/mlesky
Maximum likelihood estimation of effective population size through time, growth rates, and phylodynamic regressions
| boot | Bootstrap for Ne and regression coefficients |
| ddSimCoal | Simulation of coalescent dated phylogeny using... |
| mlesky | mlesky: Maximum likelihood estimation of effective population... |
| mlskygrid | Maximum likelihood non-parametric estimation of effective... |
| optim_res_aic | Optimize the skygrid time axis resolution using AIC criterion |
| optim_res_bic | Optimize the skygrid time axis resolution using BIC criterion |
| parboot | Parametric bootstrap for Ne and regression coefficients. |
| plotBoth | Plot a dated phylogeny and alpha function |
| plot.mlskygrid | Plot mlskygrid |
| print.mlskygrid | Print fitted mlskygrid |
| simCoal | Simulation of coalescent dated phylogeny |
| suggest_res | Heuristic selection of grid resolution. Selects res based on... |
