boot: Bootstrap for Ne and regression coefficients
In emvolz-phylodynamics/mlesky: Maximum likelihood estimation of effective population size through time, growth rates, and phylodynamic regressions
boot R Documentation
Bootstrap for Ne and regression coefficients
Description
The trees provided to this function can be based on a non-parametric bootstrap such as produced by IQ-TREE or PhyML.
Confidence intervals for Ne are based on a normal approximation to the bootstrap distribution at each time point.
Usage
boot(fit, trees, ncpu = 1)
Arguments
fit
mlesky fitted object (mlskygrid class)
trees
list of trees or ape::multiPhylo object
ncpu
Number of CPUs to use for parallel computation
Value
A list of fitted mlesky models (length equal to the number of trees provided) with confidence intervals for Ne and regression coefficients
emvolz-phylodynamics/mlesky documentation built on Feb. 13, 2025, 1:47 p.m.
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| boot | R Documentation |
Bootstrap for Ne and regression coefficients
Description
The trees provided to this function can be based on a non-parametric bootstrap such as produced by IQ-TREE or PhyML. Confidence intervals for Ne are based on a normal approximation to the bootstrap distribution at each time point.
Usage
boot(fit, trees, ncpu = 1)
Arguments
fit |
mlesky fitted object (mlskygrid class) |
trees |
list of trees or ape::multiPhylo object |
ncpu |
Number of CPUs to use for parallel computation |
Value
A list of fitted mlesky models (length equal to the number of trees provided) with confidence intervals for Ne and regression coefficients
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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