parboot: Parametric bootstrap for Ne and regression coefficients.
In emvolz-phylodynamics/mlesky: Maximum likelihood estimation of effective population size through time, growth rates, and phylodynamic regressions
parboot R Documentation
Parametric bootstrap for Ne and regression coefficients.
Description
This will simulate coalescent trees conditional on the provided mlesky estimate of Ne.
The model is refitted to each coalescent tree to provide an estimate of the standard error of Ne estimates over time.
Usage
parboot(fit, nrep = 200, ncpu = 1, dd)
Arguments
fit
mlesky fit
nrep
Number of simulations
ncpu
Number of CPUs
dd
Whether or not to use dd simulation method. Default is false for ntip<=500 and true otherwise
Value
A fitted mlesky model with updated confidence intervals for Ne and regression coefficients
emvolz-phylodynamics/mlesky documentation built on Feb. 13, 2025, 1:47 p.m.
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| parboot | R Documentation |
Parametric bootstrap for Ne and regression coefficients.
Description
This will simulate coalescent trees conditional on the provided mlesky estimate of Ne. The model is refitted to each coalescent tree to provide an estimate of the standard error of Ne estimates over time.
Usage
parboot(fit, nrep = 200, ncpu = 1, dd)
Arguments
fit |
mlesky fit |
nrep |
Number of simulations |
ncpu |
Number of CPUs |
dd |
Whether or not to use dd simulation method. Default is false for ntip<=500 and true otherwise |
Value
A fitted mlesky model with updated confidence intervals for Ne and regression coefficients
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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