Description Details Fields Methods Author(s) See Also Examples
This class encapsulates the websocket connection between the R/bioc session and the epiviz web app.
Epiviz uses websockets to connect R/bioc sessions to the epiviz web app. Objects of this class encapsulates websocket objects defined in the httpuv
package. The Epiviz session manager defined in class EpivizDeviceMgr
calls methods in this class to send requests to the web app or to respond to requests. Can also be executed in standalone
mode, serving the epiviz web app JS through the httpuv
server.
port
:Port for websocket connection (default 7312)
websocket
:A WebSocket
object from the httpuv
package
server
:Internal use only: A server object from the httpuv
package, set by the startServer
method
interrupted
:Internal use only: has an interrupt been issued
socketConnected
:Internal use only: is the websocket connected
msgCallback
:Internal use only: callback functions on websocket or http requests. Created using shiny:::HandlerManager
requestQueue
:Internal use only: Queue for unsent requests
tryPorts
:Internal use only: Try more ports when opening websocket server if port requested by user is in use.
daemonized
:Internal use only: is it running in daemonized mode
standalone
:Internal use only: is it running in standalone mode
startServer(...)
: Sets up the server and websocket objects from httpuv
package. Specifically, it sets the server
field by calling startServer
passing port
and
a set of callbacks, including a onWSOpen
callback that sets the websocket
field and sets
the msgCallback
method as the websocket$onMessage
callback. In standalone mode, it also creates a callback for http requests.
stopServer()
: Stops the websocket server, calling stopServer
.
service()
: A blocking (if not running daemonized) loop for the websocket to listen and serve requests. Calls service
.
stopService()
: Signals an interrupt so the service
loop is stopped.
runServer()
: A convenience function that runs startServer
and service
. stopServer
is called on exit.
isClosed()
: Returns TRUE
if server connection is closed
bindManager(mgr)
: Sets the msgCallback
on websocket message callback. It calls methods from argument mgr
, usually an object of class EpivizDeviceMgr
. Methods currently called frommgr
are: getMeasurements,getRows,getValues,getSeqInfos
and getAllData
. The latter is used only in testing.
sendRequest(request)
: Converts argument request
to JSON and pushes it to the requestQueue
.
popRequest()
: Pop a request from requestQueue
and send to web app.
emptyRequestQueue()
: Empties request queue.
Hector Corrada Bravo
EpivizDeviceMgr-class, EpivizChart-class, httpuv, startServer, service, WebSocket
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ## Not run:
mgr <- list(getData=function(measurements, chr, start, end) {
return(chr)
},
verbose=TRUE)
server <- epivizr:::EpivizServer$new(port=7123L)
server$bindManager(mgr)
server$startServer()
browseURL("http://localhost:7123/")
tryCatch(server$service(), interrupt=function(int) invisible())
## End(Not run)
|
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