tcga_colon_expression: Example exon-level RNAseq data from TCGA project for epivizr.

In epiviz/epivizr-release: R Interface to epiviz web app

Description

A SummarizedExperiment object containing exon-level counts from RNAseq data from the TCGA project. Only exons in human chromosome 11 are included.

Usage

data(tcga_colon_expression)

Format

A SummarizedExperiment object with 12,800 rows (exons) and 40 samples.

assay(colonSE)

exon-level count matrix

colData(colonSE)

a DataFrame containing sample information. Normal/Tumor status is given in column sample_type

Source

TCGA project: https://tcga-data.nci.nih.gov/tcga/

Examples

data(tcga_colon_expression)
show(colonSE)
table(colData(colonSE)$sample_type)

epiviz/epivizr-release documentation built on May 16, 2019, 8:18 a.m.